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Allan Costa

Graduate Student
Groups
Project Research

Accelerating Protein Dynamics Simulation Towards Folding Timescales

Proteins form the clockwork behind biological processes, acting as molecular machines whose 3D shape changes drive essential cellular…
Project Research

RiboGen: RNA Sequence and Structure Co-Generation

RNA is a fundamental biomolecule that stands at the intersection of modern biology and the origins of life. It carries genetic instruc…
Project Research

EquiJump: AI-Accelerated Protein Molecular Dynamics Simulation

Proteins are the workhorses of the cell, powering the biological processes that make life possible. Their precise choreographies catalyze r…
Project Research

Ophiuchus: Protein Autoencoding and Latent Diffusion from First-Principles of Symmetry

We recently introduced Ophiuchus, a novel deep learning architecture for modeling protein structures. Ophiuchus is the first autoencod…
Project Research

Interdocker: Frame-Based Protein-Protein Docking

Modeling protein-protein interactions is a necessary step for elucidating the mechanisms behind fundamental biological processes. Recent ad…
Project Research

Rational Engineering of Proteins with Deep Learning

Designing protein inhibitors for a protein target using a combination of deep learning and high throughput wetlab screens.